Pretty much every quest in The Old Republic eventually boils down to this. The inevitable, shoehorned-in moral conundrum isn't really an issue for dress wearing Jedi types, they are ladies and gentlemen of leisure. For bounty hunters and smugglers, however, the choice between light and dark is essentially a choice between sucking or not sucking at their job. My Bounty Hunter has a capture/kill ratio of roughly 3%. A friend runs a light side smuggler. He has smuggled, like, two things.
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